PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

MCI19577.1

Organism

Trifolium medium

Taxonomic ID

97028

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; 50 kb inversion clade; NPAAA clade; Hologalegina; IRL clade; Trifolieae; Trifolium

Family

ARF

Protein Properties

Length: 114aa MW: 12590.5 Da PI: 10.666

Description

ARF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
MCI19577.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	35.4	1.9e-11	5	47	55	99
ETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS B3 55 ksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99 +++r++lt+GW+ Fv+ ++L +gD v+F + +++el+++v+r+ MCI19577.1 5 QPRRHLLTTGWSAFVNKKKLVSGDAVLFL--RGEDGELRLGVRRA 47 6899***********************..449999***996 PP
2	Auxin_resp	42.8	2.3e-15	73	114	2	43
Auxin_resp 2 ahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGm 43 ++a+st+++F++ YnPr ++seF+++++k++k+l+ ++svGm MCI19577.1 73 VNALSTRCAFNIHYNPRIGSSEFIIPMHKFLKSLDYSYSVGM 114 789**************************************9 PP

Sequence ? help Back to Top
Protein Sequence Length: 114 aa Download sequence
MNAGQPRRHL LTTGWSAFVN KKKLVSGDAV LFLRGEDGEL RLGVRRAAQL KSSSNFSSIS 60 GQQLNLGSLT DIVNALSTRC AFNIHYNPRI GSSEFIIPMH KFLKSLDYSY SVGM

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G33860.1	3e-42	ARF family protein