PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MCI19768.1
Organism
Trifolium medium
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; 50 kb inversion clade; NPAAA clade; Hologalegina; IRL clade; Trifolieae; Trifolium
Family GRAS
Protein Properties Length: 212aa    MW: 23936.5 Da    PI: 7.1148
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MCI19768.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS236.98.6e-731211133344
        GRAS 133 asRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsles..erdevLk 229
                 a Rp+gpp lR+Tg+g+p+++++++l+e+g rLa++A++++v+f f+ ++a rled+++++L+v+++Ea+aVn+++qlhrll ++ + ++  ++++vL 
  MCI19768.1   1 ALRPGGPPFLRLTGIGPPSHDNRDNLREIGLRLAELARSVNVRFAFRGVAAWRLEDVKPWMLQVSSKEAVAVNSIMQLHRLLGSEPDPNNpsAIETVLG 99 
                 68**********************************************9888******************************888776666699***** PP

        GRAS 230 lvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvp 328
                  ++sl+Pk+++vveqea+hn+  F++rf+eal+yys++fdslea      e ++ + +++l+rei+nvv+ceg +r+erhe l kWrerl++ GF+p++
  MCI19768.1 100 WIRSLNPKIMTVVEQEANHNEDGFMDRFTEALHYYSTVFDSLEAC---PVEPDKAMAEFYLQREICNVVCCEGPARVERHEPLVKWRERLGKTGFRPLH 195
                 ******************************************999...567788889999*************************************** PP

        GRAS 329 lsekaakqaklllrkv 344
                 l+++a kqa++ll  +
  MCI19768.1 196 LGSNAFKQASMLLTLF 211
                 *************876 PP
Sequence ? help Back to Top
Protein Sequence    Length: 212 aa     Download sequence    
ALRPGGPPFL RLTGIGPPSH DNRDNLREIG LRLAELARSV NVRFAFRGVA AWRLEDVKPW  60
MLQVSSKEAV AVNSIMQLHR LLGSEPDPNN PSAIETVLGW IRSLNPKIMT VVEQEANHNE  120
DGFMDRFTEA LHYYSTVFDS LEACPVEPDK AMAEFYLQRE ICNVVCCEGP ARVERHEPLV  180
KWRERLGKTG FRPLHLGSNA FKQASMLLTL FS
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G14920.12e-84GRAS family protein