PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MCI20771.1
Organism
Trifolium medium
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; 50 kb inversion clade; NPAAA clade; Hologalegina; IRL clade; Trifolieae; Trifolium
Family GRAS
Protein Properties Length: 151aa    MW: 16617.9 Da    PI: 7.8653
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MCI20771.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS159.52.9e-49115138178
        GRAS  38 mqRlaayfteALaarlarsvselykalppsetseknsseelaal..............klfsevsPilkfshltaNqaIleavegeervHiiDfdisqG 122
                 mqR+a++fte L+arla + ++ +++ + s+t++++ss++ + +              ++ ++++P++kf+h+taNqaI ea+e+eervH+iD+di qG
  MCI20771.1   1 MQRVASCFTESLSARLAATLTTKSSSNKKSTTPSSSSSSSSSCFssfpsnpmevlkiyQIVYQACPYIKFAHFTANQAIFEAFETEERVHVIDLDILQG 99 
                 8*****************766666666555555444333333334566666666666699*************************************** PP

        GRAS 123 lQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfef 178
                  QWpa++qaLa+R++g+p lRiTgvg+      e+++etg+ L+++A++l++pfef
  MCI20771.1 100 YQWPAFMQALAARSGGAPFLRITGVGP----CIESVRETGRCLTELAHSLRIPFEF 151
                 ***************************....************************9 PP
Sequence ? help Back to Top
Protein Sequence    Length: 151 aa     Download sequence    
MQRVASCFTE SLSARLAATL TTKSSSNKKS TTPSSSSSSS SSCFSSFPSN PMEVLKIYQI  60
VYQACPYIKF AHFTANQAIF EAFETEERVH VIDLDILQGY QWPAFMQALA ARSGGAPFLR  120
ITGVGPCIES VRETGRCLTE LAHSLRIPFE F
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G01570.14e-32GRAS family protein