PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MCI20902.1
Organism
Trifolium medium
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; 50 kb inversion clade; NPAAA clade; Hologalegina; IRL clade; Trifolieae; Trifolium
Family LBD
Protein Properties Length: 113aa    MW: 11714.3 Da    PI: 8.8573
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MCI20902.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260117.96.2e-3724112188
      DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeq.pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqle 88 
                 +C aCk+lrrkC+++C++apyf +e+ +++fa+vhk+FGasnv+kll  +p ++r da+ sl+yeA+ar+rdP+yG+vg+i++lqqq+ 
  MCI20902.1  24 PCGACKFLRRKCVPGCIFAPYFDSEHgTSHFAAVHKVFGASNVSKLLLGIPINRRLDAAVSLCYEAQARLRDPIYGCVGHIFALQQQVT 112
                 7*********************999879***********************************************************85 PP
Sequence ? help Back to Top
Protein Sequence    Length: 113 aa     Download sequence    
MSLNSSGSGG SGGGSGSGGN SGSPCGACKF LRRKCVPGCI FAPYFDSEHG TSHFAAVHKV  60
FGASNVSKLL LGIPINRRLD AAVSLCYEAQ ARLRDPIYGC VGHIFALQQQ VTH
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G45420.16e-51LBD family protein