PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MCI21249.1
Organism
Trifolium medium
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; 50 kb inversion clade; NPAAA clade; Hologalegina; IRL clade; Trifolieae; Trifolium
Family M-type_MADS
Protein Properties Length: 158aa    MW: 17788.2 Da    PI: 7.3557
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MCI21249.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF49.94.2e-161253445
                -SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSE CS
      SRF-TF  4 enksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgk 45
                ++k  r+v fskR+ng++KKA+ LS+LC+a+v v  f + gk
  MCI21249.1 12 KDKDARYVAFSKRKNGLFKKASQLSTLCNARVGVFGFTPGGK 53
                78999****************************999988887 PP
Sequence ? help Back to Top
Protein Sequence    Length: 158 aa     Download sequence    
MGRRKIEMEY LKDKDARYVA FSKRKNGLFK KASQLSTLCN ARVGVFGFTP GGKPFAFGSP  60
TFQAVTNEYL NEGQGESSNQ NVENSENENL INLNEQLMDV TKELKEVEIT KDKNGKVPNI  120
SYDDLDLEQL QKVKARLKEL HGDIEAASSM LILAKEPR
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G34440.19e-30M-type_MADS family protein