PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MCI21395.1
Organism
Trifolium medium
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; 50 kb inversion clade; NPAAA clade; Hologalegina; IRL clade; Trifolieae; Trifolium
Family M-type_MADS
Protein Properties Length: 169aa    MW: 19589.7 Da    PI: 9.8521
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MCI21395.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF43.93e-141050242
                ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-T CS
      SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifss 42
                +i n+  r+ t+ kR + +lKK +ELS+LC++e++ i++++
  MCI21395.1 10 FIVNDVARKATYKKRSKNVLKKVNELSTLCGIEACAIVYGP 50
                799************************************97 PP
Sequence ? help Back to Top
Protein Sequence    Length: 169 aa     Download sequence    
MARQKVKLAF IVNDVARKAT YKKRSKNVLK KVNELSTLCG IEACAIVYGP YEPEPEIWPS  60
SPRGVQKVVS KFRTKPEFEQ SKKKLSQDDY LKQRIVKGDD QLKKLRKENR ENEMKMLMYE  120
YLKGQIVLDN ISMNDLNDLS WYIDHNLKDI GRILEAGYTD NGQGQIMTA
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G48670.17e-51M-type_MADS family protein