PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

MCI22628.1

Organism

Trifolium medium

Taxonomic ID

97028

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; 50 kb inversion clade; NPAAA clade; Hologalegina; IRL clade; Trifolieae; Trifolium

Family

MYB

Protein Properties

Length: 190aa MW: 20602.6 Da PI: 8.7754

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
MCI22628.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	23.4	1.4e-07	38	83	1	47
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 +g+W++eEd +l I+r++ gR++k+c++rw + MCI22628.1 38 KGPWSAEEDRILTXXXXXXXXXXXXXISRYIK-GRSGKSCRLRWCNQ 83 79***************************9.*********985 PP
2	Myb_DNA-binding	60.6	3.4e-19	92	134	3	47
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 +++++Ede ++ a++q+G++ W+tIar ++ gRt++ +k++w++ MCI22628.1 92 PFSPQEDETIIAAHTQYGNR-WATIARLLP-GRTDNAVKNHWNST 134 89****************.*****.*********986 PP

Sequence ? help Back to Top
Protein Sequence Length: 190 aa Download sequence
MNMNFEAMNR SSSTTTSSSD SCSSESNPTN QNKLDRIKGP WSAEEDRILT XXXXXXXXXX 60 XXXISRYIKG RSGKSCRLRW CNQLSPTVEH RPFSPQEDET IIAAHTQYGN RWATIARLLP 120 GRTDNAVKNH WNSTLKRRAG CGGGRGVGGD SVTVAGTVSG GNERGSCSAL AFEDDPLTAL 180 TLAPPGNVNG

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G50060.1	8e-48	MYB family protein