PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MCI22887.1
Organism
Trifolium medium
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; 50 kb inversion clade; NPAAA clade; Hologalegina; IRL clade; Trifolieae; Trifolium
Family GRAS
Protein Properties Length: 193aa    MW: 21726.4 Da    PI: 5.8302
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MCI22887.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS201.64.7e-62271921172
        GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshltaN 99 
                 l++lLl+cA++v++ +le+a+a+L+++s laspdgd+mqR+aayfteALa r+++ +++l kal++++     +see+ ++klf+e++P+lk++++++N
  MCI22887.1  27 LIHLLLTCANHVADCNLENANATLEQISMLASPDGDTMQRIAAYFTEALADRILKAWPGLHKALNSTRMV--MVSEEILVQKLFFELFPFLKVAYILTN 123
                 689*************************************************************998886..69************************* PP

        GRAS 100 qaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeel 172
                 qaI+ea+ege+++HiiD+++ +++QW+aLlq L++Rpegpp+lRiT v++    +ke l ++++rL + Ae+l
  MCI22887.1 124 QAIVEAMEGEKMIHIIDLNAAEPAQWIALLQVLSTRPEGPPHLRITSVHP----KKEVLDKIAHRLIEEAERL 192
                 **************************************************....9***************998 PP
Sequence ? help Back to Top
Protein Sequence    Length: 193 aa     Download sequence    
MMSVPPSIGS PHSWLKELKS EERGLYLIHL LLTCANHVAD CNLENANATL EQISMLASPD  60
GDTMQRIAAY FTEALADRIL KAWPGLHKAL NSTRMVMVSE EILVQKLFFE LFPFLKVAYI  120
LTNQAIVEAM EGEKMIHIID LNAAEPAQWI ALLQVLSTRP EGPPHLRITS VHPKKEVLDK  180
IAHRLIEEAE RLD
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G50420.12e-99GRAS family protein