PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

MCI23173.1

Organism

Trifolium medium

Taxonomic ID

97028

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; 50 kb inversion clade; NPAAA clade; Hologalegina; IRL clade; Trifolieae; Trifolium

Family

C2H2

Protein Properties

Length: 118aa MW: 13851 Da PI: 10.3674

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
MCI23173.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	19.9	1.9e-06	6	28	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++C+k F r nL+ H r H MCI23173.1 6 FVCEICNKGFQRDQNLQLHRRGH 28 89*******************88 PP
2	zf-C2H2	16	3.4e-05	82	104	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 +kC +C+k + +s+ k H +t+ MCI23173.1 82 WKCDKCSKKYAVQSDWKAHTKTC 104 58*******************98 PP

Sequence ? help Back to Top
Protein Sequence Length: 118 aa Download sequence
MATNRFVCEI CNKGFQRDQN LQLHRRGHNL PWKLKQRSNK EPRKKVYICP EKTCVHHDAA 60 RALGDLTGIK KHFSRKHGEK KWKCDKCSKK YAVQSDWKAH TKTCGTREYK CDCGTLFS

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	33	45	KLKQRSNKEPRKK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G66730.1	4e-70	C2H2 family protein