PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MCI23640.1
Organism
Trifolium medium
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; 50 kb inversion clade; NPAAA clade; Hologalegina; IRL clade; Trifolieae; Trifolium
Family GRAS
Protein Properties Length: 192aa    MW: 21249.3 Da    PI: 5.8072
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MCI23640.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS206.31.8e-63119232225
        GRAS  32 spdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlq 130
                 s +gdp+qRl ay++e+L+arl +s+s +ykal++ e +   s e +++++++++++P++kf+++  N  I ea+++e+r+HiiDf+i qG+QW++Llq
  MCI23640.1   1 SVSGDPIQRLSAYMLEGLRARLESSGSVIYKALKCDEPT---SNELMNSMQILYHACPYFKFAYISSNVXICEALZNESRIHIIDFQIAQGTQWLSLLQ 96 
                 6789**********************************9...999999*************************************************** PP

        GRAS 131 aLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserd 225
                 aL+ Rp+gpp +R+Tg+++++s+  +   l+ +g++La++A+++gvpfef+  va   +d++le+L v++gEalaVn+ ++lh+++desvs+e++rd
  MCI23640.1  97 ALTRRPGGPPFVRVTGIDDSQSFhaRGGGLHIVGKKLADYAKTCGVPFEFHS-VAMFGSDVQLEDLVVQNGEALAVNFPFALHHMPDESVSTENHRD 192
                 *******************9999889999***********************.79999***********************************9876 PP
Sequence ? help Back to Top
Protein Sequence    Length: 192 aa     Download sequence    
SVSGDPIQRL SAYMLEGLRA RLESSGSVIY KALKCDEPTS NELMNSMQIL YHACPYFKFA  60
YISSNVXICE ALZNESRIHI IDFQIAQGTQ WLSLLQALTR RPGGPPFVRV TGIDDSQSFH  120
ARGGGLHIVG KKLADYAKTC GVPFEFHSVA MFGSDVQLED LVVQNGEALA VNFPFALHHM  180
PDESVSTENH RD
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G17230.12e-92GRAS family protein