PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

MCI23882.1

Organism

Trifolium medium

Taxonomic ID

97028

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; 50 kb inversion clade; NPAAA clade; Hologalegina; IRL clade; Trifolieae; Trifolium

Family

C2H2

Protein Properties

Length: 88aa MW: 10155.7 Da PI: 6.7285

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
MCI23882.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	16.6	2.2e-05	2	25	1	23
EEETTTT.EEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCg.ksFsrksnLkrHirtH 23 y+C+ C+ k +s s+Lk+H+r + MCI23882.1 2 YSCNRCNkKKYSVLSDLKSHMRQC 25 99********************87 PP
2	zf-C2H2	11.7	0.00083	29	49	3	20
ET...TTTEEESSHHHHHHHH CS zf-C2H2 3 Cp...dCgksFsrksnLkrHi 20 C+ Cg++Fsrk+ L H MCI23882.1 29 CKwkcCCGTTFSRKDKLFGHV 49 777778***********9997 PP

Sequence ? help Back to Top
Protein Sequence Length: 88 aa Download sequence
MYSCNRCNKK KYSVLSDLKS HMRQCGDECK WKCCCGTTFS RKDKLFGHVA LFEGHMPAVV 60 LEECEEKGKQ VMVEEIEDSI VEKEKSDL

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G34370.3	4e-26	C2H2 family protein