PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

MCI25070.1

Organism

Trifolium medium

Taxonomic ID

97028

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; 50 kb inversion clade; NPAAA clade; Hologalegina; IRL clade; Trifolieae; Trifolium

Family

LBD

Protein Properties

Length: 140aa MW: 15670.6 Da PI: 6.4976

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
MCI25070.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	140.9	4e-44	9	107	1	99
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallke 99 +CaaCk+lrrkC++dC++apyfp e+p+kfanvhk+FGasnv+k+l+++ +++red+++sl+yeAear++dPvyG+vg+i+ lq+ql l++el+++++ MCI25070.1 9 PCAACKFLRRKCNQDCIFAPYFPPEEPHKFANVHKVFGASNVSKILNEVLPHQREDTVNSLAYEAEARIKDPVYGCVGFISGLQRQLLGLQKELDATNA 107 7*********************************************************************************************99876 PP

Sequence ? help Back to Top
Protein Sequence Length: 140 aa Download sequence
MTSSYSNSPC AACKFLRRKC NQDCIFAPYF PPEEPHKFAN VHKVFGASNV SKILNEVLPH 60 QREDTVNSLA YEAEARIKDP VYGCVGFISG LQRQLLGLQK ELDATNADLI QFTIQGSSSL 120 GLGHVDHSHD FYNYPSNFEQ

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G27650.1	3e-66	LBD family protein