PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MCI25476.1
Organism
Trifolium medium
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; 50 kb inversion clade; NPAAA clade; Hologalegina; IRL clade; Trifolieae; Trifolium
Family HB-other
Protein Properties Length: 127aa    MW: 15045.2 Da    PI: 10.2933
Description HB-other family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MCI25476.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox56.93.4e-182179357
                --SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS
    Homeobox  3 kRttftkeqleeLeelFeknrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57
                k  ++t+eq+e+Le+++ ++++ps  +r++L ++     +++ +q+kvWFqNrR +ek+
  MCI25476.1 21 KYVRYTAEQIEALEKVYVECPKPSSLRRQQLIRENpvlsNIEPKQIKVWFQNRRCREKQ 79
                5679******************************9999*******************97 PP
2bZIP_120.51e-06731181863
                 HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
      bZIP_1  18 rrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklksev 63 
                 rr+R++ ++e  eL++    L a Nk L +e+++l+k+v++l +e+
  MCI25476.1  73 RRCREKQRKESSELQTLNRRLAAMNKLLTEENDRLQKQVSQLVNEN 118
                 9****************************************98876 PP
Sequence ? help Back to Top
Protein Sequence    Length: 127 aa     Download sequence    
MAMAVAQRDN SIERHIDSSG KYVRYTAEQI EALEKVYVEC PKPSSLRRQQ LIRENPVLSN  60
IEPKQIKVWF QNRRCREKQR KESSELQTLN RRLAAMNKLL TEENDRLQKQ VSQLVNENGF  120
MRQQINT
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60690.14e-65HD-ZIP family protein