PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MCI25522.1
Organism
Trifolium medium
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; 50 kb inversion clade; NPAAA clade; Hologalegina; IRL clade; Trifolieae; Trifolium
Family C3H
Protein Properties Length: 92aa    MW: 10748.5 Da    PI: 9.0934
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MCI25522.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH50.43.7e-16934126
                --S---SGGGGTS--TTTTT-SS-SS CS
     zf-CCCH  1 yktelCrffartGtCkyGdrCkFaHg 26
                +ktelC+ +++tGtC+yGd C+FaHg
  MCI25522.1  9 FKTELCNKWQETGTCPYGDHCQFAHG 34
                79***********************8 PP
2zf-CCCH20.77.1e-074771125
                --S---SGGGGTS.--TTTTT-SS-S CS
     zf-CCCH  1 yktelCrffartG.tCkyGdrCkFaH 25
                ykte Cr  ++ G  C+yG rC+F H
  MCI25522.1 47 YKTEVCRMVLA-GvMCPYGHRCHFRH 71
                9**********.66**********88 PP
Sequence ? help Back to Top
Protein Sequence    Length: 92 aa     Download sequence    
MVVYNQGMFK TELCNKWQET GTCPYGDHCQ FAHGIGELRP VIRHPRYKTE VCRMVLAGVM  60
CPYGHRCHFR HALTEQEKAL SQPKPRSMKL ER
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68200.12e-52C3H family protein