PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

MCI26493.1

Organism

Trifolium medium

Taxonomic ID

97028

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; 50 kb inversion clade; NPAAA clade; Hologalegina; IRL clade; Trifolieae; Trifolium

Family

NF-YC

Protein Properties

Length: 143aa MW: 16784.1 Da PI: 6.0034

Description

NF-YC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
MCI26493.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NF-YC	180.7	1.3e-56	36	140	1	102
NF-YC 1 qlksfwekq...iekatdfknhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdifdflvdiv 96 ql++fw++q ie+++dfknh+lPlarikki+kadedv+misaeaP+l++kacelfilelt+rswlhaeenkrrtl+k+diaaa+trtdifdflvdiv MCI26493.1 36 QLQMFWSYQrqeIEHVNDFKNHQLPLARIKKIMKADEDVRMISAEAPILFAKACELFILELTIRSWLHAEENKRRTLQKNDIAAAITRTDIFDFLVDIV 134 89***998899********************************************************************************** PP NF-YC 97 prdelk 102 prde+k MCI26493.1 135 PRDEIK 140 *975 PP

Sequence ? help Back to Top
Protein Sequence Length: 143 aa Download sequence
MENNNSHNQQ QYPTPQPTAV TSAAPFQHLL QQQQQQLQMF WSYQRQEIEH VNDFKNHQLP 60 LARIKKIMKA DEDVRMISAE APILFAKACE LFILELTIRS WLHAEENKRR TLQKNDIAAA 120 ITRTDIFDFL VDIVPRDEIK EEG

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	109	115	RRTLQKN

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G63470.2	1e-72	NF-YC family protein