PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

MCI27811.1

Organism

Trifolium medium

Taxonomic ID

97028

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; 50 kb inversion clade; NPAAA clade; Hologalegina; IRL clade; Trifolieae; Trifolium

Family

M-type_MADS

Protein Properties

Length: 85aa MW: 9944.71 Da PI: 10.6396

Description

M-type_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
MCI27811.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	82.7	2.4e-26	34	82	2	50
---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS SRF-TF 2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50 +++n ++rqv fs Rr+ ++KKA+ELS+LCdaev vi+fsstgklye+s MCI27811.1 34 KVDNLIRRQVAFSERRKSLFKKAKELSILCDAEVGVIVFSSTGKLYEFS 82 67999*******************************************8 PP

Sequence ? help Back to Top
Protein Sequence Length: 85 aa Download sequence
LVFGVEEKKE LVKVEENKKK KKKRMGSRDI EIEKVDNLIR RQVAFSERRK SLFKKAKELS 60 ILCDAEVGVI VFSSTGKLYE FSRPR

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	18	24	KKKKKKR
2	18	57	KKKKKKRMGSRDIEIEKVDNLIRRQVAFSERRKSLFKKAK
3	19	58	KKKKKKRMGSRDIEIEKVDNLIRRQVAFSERRKSLFKKAK
4	20	59	KKKKKKRMGSRDIEIEKVDNLIRRQVAFSERRKSLFKKAK
5	21	60	KKKKKKRMGSRDIEIEKVDNLIRRQVAFSERRKSLFKKAK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G14210.1	4e-22	MIKC_MADS family protein