PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

MCI27892.1

Organism

Trifolium medium

Taxonomic ID

97028

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; 50 kb inversion clade; NPAAA clade; Hologalegina; IRL clade; Trifolieae; Trifolium

Family

HD-ZIP

Protein Properties

Length: 114aa MW: 13563.5 Da PI: 9.9898

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
MCI27892.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	62	9.1e-20	21	73	4	56
-SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 4 RttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 + +++ eq+++Le+ Fe +++ +++ +LAk lgL+ rqV +WFqNrRa++k MCI27892.1 21 KKRLSLEQVKALEKSFEIGNKLEPDRKMQLAKALGLQPRQVAIWFQNRRARWK 73 556899**********************************************9 PP
2	HD-ZIP_I/II	131	4.5e-42	19	108	1	90
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLree 90 ekk+rls eqvk+LE+sFe +kLep+rK++la++Lglqprqva+WFqnrRAR+ktkqlEk+ye+Lk+++++lk++n++L++++++L++e MCI27892.1 19 EKKKRLSLEQVKALEKSFEIGNKLEPDRKMQLAKALGLQPRQVAIWFQNRRARWKTKQLEKEYEVLKKQFESLKADNDSLKAQNHKLHAE 108 69*************************************************************************************976 PP

Sequence ? help Back to Top
Protein Sequence Length: 114 aa Download sequence
MHVDEDQLSD DEGYSQLGEK KKRLSLEQVK ALEKSFEIGN KLEPDRKMQL AKALGLQPRQ 60 VAIWFQNRRA RWKTKQLEKE YEVLKKQFES LKADNDSLKA QNHKLHAEFW LRLL

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	68	76	RRARWKTKQ

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G15150.1	7e-55	HD-ZIP family protein