PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

MCI28279.1

Organism

Trifolium medium

Taxonomic ID

97028

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; 50 kb inversion clade; NPAAA clade; Hologalegina; IRL clade; Trifolieae; Trifolium

Family

GRAS

Protein Properties

Length: 170aa MW: 18882.6 Da PI: 6.7929

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
MCI28279.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	136.2	3.6e-42	32	170	3	147
GRAS 3 elLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshltaNqa 101 ++L++ Ae +++g+ +aq +Larl+++ sp g+p++R+ +y++eAL+ l++++++ ++ s+ + + ++ a+k fse+sP+l+f+++t+Nq MCI28279.1 32 DQLYKTAELIEAGNPVQAQGILARLNHQLSPIGKPFERASFYVKEALQLMLHSNGNN------LNAFSPISFIFKIGAYKSFSEISPVLQFANFTCNQV 124 689************************************************4444......4444445589********************** PP GRAS 102 IleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgv 147 + ea+e+ +r+Hi+Dfdi+ G+QW +++q+L R +g psl+iT+v MCI28279.1 125 LIEALERFDRIHIVDFDIGFGVQWSSFMQELVLRGNGIPSLKITAV 170 ******************************************97 PP

Sequence ? help Back to Top
Protein Sequence Length: 170 aa Download sequence
QSSVVPFTKQ QKVSSTIAGD DASNQLQQSI FDQLYKTAEL IEAGNPVQAQ GILARLNHQL 60 SPIGKPFERA SFYVKEALQL MLHSNGNNLN AFSPISFIFK IGAYKSFSEI SPVLQFANFT 120 CNQVLIEALE RFDRIHIVDF DIGFGVQWSS FMQELVLRGN GIPSLKITAV

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G00150.1	1e-52	GRAS family protein