PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MCI29249.1
Organism
Trifolium medium
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; 50 kb inversion clade; NPAAA clade; Hologalegina; IRL clade; Trifolieae; Trifolium
Family HSF
Protein Properties Length: 103aa    MW: 11774.4 Da    PI: 6.518
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MCI29249.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind84.51.5e-263492260
                  HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHT CS
  HSF_DNA-bind  2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmY 60
                  Fl+k+y+++ed++++++isw+e+g++f+v++++ fa+++Lpk+Fkh+nf+SFvRQLn+Y
    MCI29249.1 34 FLTKTYNLVEDKSIDDVISWNEDGSTFIVWNPTVFASNLLPKHFKHNNFSSFVRQLNTY 92
                  9********************************************************** PP
Sequence ? help Back to Top
Protein Sequence    Length: 103 aa     Download sequence    
MAPPPPPVEN NAESTTTVTT TPILESQRSI PTPFLTKTYN LVEDKSIDDV ISWNEDGSTF  60
IVWNPTVFAS NLLPKHFKHN NFSSFVRQLN TYVIQFILKF FLK
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G62020.12e-40HSF family protein