PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

MCI29344.1

Organism

Trifolium medium

Taxonomic ID

97028

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; 50 kb inversion clade; NPAAA clade; Hologalegina; IRL clade; Trifolieae; Trifolium

Family

HD-ZIP

Protein Properties

Length: 139aa MW: 16012.7 Da PI: 4.9259

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
MCI29344.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	60.1	3.5e-19	51	104	3	56
--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 k++++++eq++ Le+ Fe ++++ e++ +LAk lgL+ rqV +WFqNrRa+ k MCI29344.1 51 KKRRLSSEQVQFLEKSFEVENKLEPERKVQLAKDLGLQPRQVAIWFQNRRARFK 104 56689***********************************************98 PP
2	HD-ZIP_I/II	131.1	4.4e-42	51	138	2	89
HD-ZIP_I/II 2 kkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLre 89 kkrrls+eqv++LE+sFe e+kLeperKv+la++Lglqprqva+WFqnrRAR+ktkqlEkdy +Lk+++d+lk++ ++L +e+++L+e MCI29344.1 51 KKRRLSSEQVQFLEKSFEVENKLEPERKVQLAKDLGLQPRQVAIWFQNRRARFKTKQLEKDYGTLKASFDNLKDDYDNLLQENDKLKE 138 9*************************************************************************************97 PP

Sequence ? help Back to Top
Protein Sequence Length: 139 aa Download sequence
TNSVVDFENG GGGGGGGGSR VVTDRSFFQQ LEKEENCGDD DYEACFHQQG KKRRLSSEQV 60 QFLEKSFEVE NKLEPERKVQ LAKDLGLQPR QVAIWFQNRR ARFKTKQLEK DYGTLKASFD 120 NLKDDYDNLL QENDKLKEE

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	99	107	RRARFKTKQ

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G01470.1	1e-41	HD-ZIP family protein