PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

MCI29579.1

Organism

Trifolium medium

Taxonomic ID

97028

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; 50 kb inversion clade; NPAAA clade; Hologalegina; IRL clade; Trifolieae; Trifolium

Family

GRAS

Protein Properties

Length: 152aa MW: 16648.2 Da PI: 8.6688

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
MCI29579.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	181.9	4.5e-56	2	150	31	180
GRAS 31 aspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLl 129 +s +g+p+qRl ay++e+L arl+ s+s++yk+l+++e + s+e l+++++++ev+P++kf+++ aN aI ea+++e rvHiiDf+isqG QW++L+ MCI29579.1 2 VSVSGEPIQRLGAYMLEGLVARLSASGSSIYKSLRCKEPE---SAELLSYMNILYEVCPYFKFGYMSANGAIAEAMKNEARVHIIDFQISQGSQWISLI 97 7899*********************************9...9*************************************************** PP GRAS 130 qaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnv 180 qa+a+Rp+gpp++RiTg+++p+s + l+ +++rL+k+A++++vpfef++ MCI29579.1 98 QAFAARPGGPPHIRITGIDDPTSAyaRGGGLHIVEKRLSKLAQHFKVPFEFHA 150 ******************9999999********************97 PP

Sequence ? help Back to Top
Protein Sequence Length: 152 aa Download sequence
MVSVSGEPIQ RLGAYMLEGL VARLSASGSS IYKSLRCKEP ESAELLSYMN ILYEVCPYFK 60 FGYMSANGAI AEAMKNEARV HIIDFQISQG SQWISLIQAF AARPGGPPHI RITGIDDPTS 120 AYARGGGLHI VEKRLSKLAQ HFKVPFEFHA AA

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G48150.1	1e-86	GRAS family protein