PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MCI30325.1
Organism
Trifolium medium
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; 50 kb inversion clade; NPAAA clade; Hologalegina; IRL clade; Trifolieae; Trifolium
Family M-type_MADS
Protein Properties Length: 159aa    MW: 18345 Da    PI: 8.4993
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MCI30325.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF771.4e-241664149
                S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS
      SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49
                k+i++++n qv+fskRr g++KKA+EL++LC+aeva+i+fs+ gk++ +
  MCI30325.1 16 KKISDETNLQVSFSKRRSGLFKKASELCTLCGAEVALIVFSPGGKVFSF 64
                68********************************************988 PP
Sequence ? help Back to Top
Protein Sequence    Length: 159 aa     Download sequence    
MSSGRKTRGR QKVEMKKISD ETNLQVSFSK RRSGLFKKAS ELCTLCGAEV ALIVFSPGGK  60
VFSFGHPNVD AVIDRYXXXX XXXXDGVMRF IEAYRSANVC QLNTQLTHIN NMLDNEKRRH  120
DELNHIRKMT EDHCWWACPI DGMNWDQLDL FKNALEDLK
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60440.12e-53M-type_MADS family protein