PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MCI32366.1
Organism
Trifolium medium
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; 50 kb inversion clade; NPAAA clade; Hologalegina; IRL clade; Trifolieae; Trifolium
Family M-type_MADS
Protein Properties Length: 80aa    MW: 9208.61 Da    PI: 10.4564
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MCI32366.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF1022.2e-322878151
                S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
      SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                krien++nrqvtf+kRrng+lKKA+ELSvLCdaeva+i+fs++g+lyey++
  MCI32366.1 28 KRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSTRGRLYEYAN 78
                79***********************************************85 PP
Sequence ? help Back to Top
Protein Sequence    Length: 80 aa     Download sequence    
MSFPNESMPD SPQRNSALKI GRGKIEIKRI ENTTNRQVTF CKRRNGLLKK AYELSVLCDA  60
EVALIVFSTR GRLYEYANNR
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G58780.22e-30MIKC_MADS family protein