PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

MCI38225.1

Organism

Trifolium medium

Taxonomic ID

97028

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; 50 kb inversion clade; NPAAA clade; Hologalegina; IRL clade; Trifolieae; Trifolium

Family

HD-ZIP

Protein Properties

Length: 116aa MW: 13882.9 Da PI: 9.8506

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
MCI38225.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	60	3.9e-19	31	85	2	56
T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 k+ ++t++q++ Le+ F+++ +++ e++ +L+++lgL+ rq+ vWFqNrR+++k MCI38225.1 31 EKKKRLTSNQIDLLERSFQEEIKLDPERKIKLSRELGLQPRQIAVWFQNRRTRWK 85 67788*************************************************9 PP
2	HD-ZIP_I/II	112.9	2.1e-36	31	115	1	85
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeve 85 ekk+rl+++q+ lLE+sF+ee kL+perK +l+reLglqprq+avWFqnrR R+k+k+lE+ y++Lk+++d +++e+++L++ev+ MCI38225.1 31 EKKKRLTSNQIDLLERSFQEEIKLDPERKIKLSRELGLQPRQIAVWFQNRRTRWKAKHLEHLYDVLKQEFDVVSKEKQKLQEEVT 115 69*******************************************************************************9975 PP

Sequence ? help Back to Top
Protein Sequence Length: 116 aa Download sequence
MDVSQAAMGE TQQRLLPAMD EMNINGNNYK EKKKRLTSNQ IDLLERSFQE EIKLDPERKI 60 KLSRELGLQP RQIAVWFQNR RTRWKAKHLE HLYDVLKQEF DVVSKEKQKL QEEVTT

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	32	61	KKKRLTSNQIDLLERSFQEEIKLDPERKIK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G03790.1	9e-44	HD-ZIP family protein