PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MCI38375.1
Organism
Trifolium medium
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; 50 kb inversion clade; NPAAA clade; Hologalegina; IRL clade; Trifolieae; Trifolium
Family GRAS
Protein Properties Length: 112aa    MW: 12861.1 Da    PI: 7.5129
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MCI38375.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS88.69.9e-281112120241
        GRAS 120 sqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesv 218
                 +qGlQWpa+++ La+R eg p++R+Tg+g+    s e l etg++L++fA++lg+ +ef ++++k  e +++++L+++p+E+laV++    h+l+d+++
  MCI38375.1   1 MQGLQWPAFFHILATRMEGRPKVRMTGMGA----SMELLVETGKNLSNFARRLGLCLEFYPIACKFGEVVDVSMLQIRPNETLAVHWLQ--HSLYDSTG 93 
                 69****************************....9**************************99999999*******************9..99**9999 PP

        GRAS 219 sleserdevLklvkslsPkvvvv 241
                 +  +    +L+l+ +l+P+++++
  MCI38375.1  94 PDWK----TLRLLEELEPRIITL 112
                 9999....*************96 PP
Sequence ? help Back to Top
Protein Sequence    Length: 112 aa     Download sequence    
MQGLQWPAFF HILATRMEGR PKVRMTGMGA SMELLVETGK NLSNFARRLG LCLEFYPIAC  60
KFGEVVDVSM LQIRPNETLA VHWLQHSLYD STGPDWKTLR LLEELEPRII TL
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G54220.11e-33GRAS family protein