PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MCI41064.1
Organism
Trifolium medium
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; 50 kb inversion clade; NPAAA clade; Hologalegina; IRL clade; Trifolieae; Trifolium
Family LBD
Protein Properties Length: 108aa    MW: 11591.5 Da    PI: 9.3962
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MCI41064.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260115.33.8e-3621108187
      DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeq.pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqql 87 
                 +C aCk+lrrkC+k+C++apyf ++q + +fa+vhk+FGasn +kll ++p ++r da+ +l+yeA arardPvyG+v++i++lqqq+
  MCI41064.1  21 PCGACKFLRRKCVKGCIFAPYFDSDQgTVHFAAVHKVFGASNASKLLMRIPVHKRLDAVVTLCYEALARARDPVYGCVAHIFALQQQV 108
                 7***********************9988**********************************************************96 PP
Sequence ? help Back to Top
Protein Sequence    Length: 108 aa     Download sequence    
MNYCGGKIGG GSDQRGNGGG PCGACKFLRR KCVKGCIFAP YFDSDQGTVH FAAVHKVFGA  60
SNASKLLMRI PVHKRLDAVV TLCYEALARA RDPVYGCVAH IFALQQQV
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1511GGKIGGG
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G00210.19e-51LBD family protein