PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

MCI42230.1

Organism

Trifolium medium

Taxonomic ID

97028

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; 50 kb inversion clade; NPAAA clade; Hologalegina; IRL clade; Trifolieae; Trifolium

Family

C2H2

Protein Properties

Length: 115aa MW: 11954.1 Da PI: 8.7823

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
MCI42230.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	13.4	0.00023	1	23	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 +kC+ C+k Fs+ L H +H MCI42230.1 1 HKCSVCNKAFSSYQALGGHKASH 23 79**********99999998887 PP
2	zf-C2H2	11.1	0.0013	58	77	1	20
EEETTTTEEESSHHHHHHHH CS zf-C2H2 1 ykCpdCgksFsrksnLkrHi 20 ++C++C+ksF++ L H MCI42230.1 58 HECSICHKSFPTGQALGGHK 77 79*********988887766 PP

Sequence ? help Back to Top
Protein Sequence Length: 115 aa Download sequence
HKCSVCNKAF SSYQALGGHK ASHRKSAVMS TAEDHQTTTT SSAVTTSSAA SNGKIKSHEC 60 SICHKSFPTG QALGGHKRCH YEGGAGGGNS TVTASEVGSS HSHHRDFDLN LPAFP

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G27730.1	8e-33	C2H2 family protein