PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OGLUM01G00400.1
Organism
Oryza glumipatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family bHLH
Protein Properties Length: 389aa    MW: 41864.2 Da    PI: 8.6522
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OGLUM01G00400.1genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH14.47e-052763141255
                      HHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
              HLH  12 RRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                      R +++ ++++ L++l+ +      +K + a++L +A+ YIk Lq
  OGLUM01G00400.1 276 RKEKLGDRIAALQQLVSPF-----GKTDTASVLMEAIGYIKFLQ 314
                      7788899*********998.....8******************9 PP
Sequence ? help Back to Top
Protein Sequence    Length: 389 aa     Download sequence    
MMASSSSSSS LCDTNHLLQD DLPWPSMPFA LAPNTFGLNH QWSQPPMLSS STDQLSSYEL  60
ESLQSVQSQL AAAPPTLSPH LQAHQLSTVL MMQELGFQWS SCAAPADQHS IASSMNNNNN  120
NSNVMVNEEE LRPRPDQSLI SNPRSCSATT LLPPPHLHLD GAVLPSINVS RLQKPAAGDE  180
PPQICCKRQA AAAVVGHSSI RDEHVPCPYA GPPAHLIQGP SNTLQMKRNT NAAAQGRGGR  240
HGSSTEHRSS TALPPSSKKP RLESHSSSML PSFKVRKEKL GDRIAALQQL VSPFGKTDTA  300
SVLMEAIGYI KFLQDQVETL SGPYLRSSKN SKKLACRAAQ QQRKGTSNGG DAAAKLDLRS  360
RGLCLVPLSC TSYVTNENGV WPPPNFRGN
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G27660.16e-46bHLH family protein