PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OGLUM01G00620.1

Organism

Oryza glumipatula

Taxonomic ID

40148

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

bHLH

Protein Properties

Length: 536aa MW: 58511 Da PI: 10.0042

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OGLUM01G00620.1	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	26.1	1.5e-08	28	78	6	54
HHHHHHHHHHHHHHHHHHHCTSCC.C....TTS-STCHHHHHHHHHHHHHH CS HLH 6 nerErrRRdriNsafeeLrellPk.as.kapskKlsKaeiLekAveYIksL 54 +e+ErrRR++++ +L +l+P+ + k ++ + L +A YIk+L OGLUM01G00620.1 28 KEMERRRRQDMKGLCVKLASLIPNeHCsKSKGATRTQLGSLDEAAAYIKKL 78 79********************7666777777*************99 PP

Sequence ? help Back to Top
Protein Sequence Length: 536 aa Download sequence
MDQEKADGGG RRRRSSGSGA SSTAAERKEM ERRRRQDMKG LCVKLASLIP NEHCSKSKGA 60 TRTQLGSLDE AAAYIKKLKE RVDELHHKRS MMSITSSRCR SGGGVPAAAA GQSTSGGGGE 120 EEEDMTRTTA AAAVVEVRQH VQEGSLISLD VVLICSAARP VKFHDVITVL EEEGADIISA 180 NFSLAAHNFY YTIYSRAFSS RIGIEASRIS ERLRALYTAL ATWSKDTYIA PTSKFGVGTL 240 PKISPHRPLF PFDSGGLPPA RVGGELVFCR RAPWVPVWSD AAAGGGGGDA RSEDWWMNRR 300 KRLVPCGGGG YIIVGDREKP APCGGASCFV VGVRDVTVLM NRQKKLAPCG SVSGFVIGVR 360 EVAAPDGGRS YLRPASPGQA VARSLLLVVL DCPLARWQRF CRISLPHSRM SIQEDNGLFA 420 TIRVLQWVWA PSSSVFPTSS FHAEFVVRVE LTLLRFNDEL RGLLLLSPSS WRQPDGDYRF 480 VKRAARQRRP KVAFVAALPQ LPVDFFRSFE TDGFMLPFDL FGNVLGFIPV NSVALY

Sequence ? help Back to Top

Protein Sequence Length: 536 aa Download sequence

MDQEKADGGG RRRRSSGSGA SSTAAERKEM ERRRRQDMKG LCVKLASLIP NEHCSKSKGA  60
TRTQLGSLDE AAAYIKKLKE RVDELHHKRS MMSITSSRCR SGGGVPAAAA GQSTSGGGGE  120
EEEDMTRTTA AAAVVEVRQH VQEGSLISLD VVLICSAARP VKFHDVITVL EEEGADIISA  180
NFSLAAHNFY YTIYSRAFSS RIGIEASRIS ERLRALYTAL ATWSKDTYIA PTSKFGVGTL  240
PKISPHRPLF PFDSGGLPPA RVGGELVFCR RAPWVPVWSD AAAGGGGGDA RSEDWWMNRR  300
KRLVPCGGGG YIIVGDREKP APCGGASCFV VGVRDVTVLM NRQKKLAPCG SVSGFVIGVR  360
EVAAPDGGRS YLRPASPGQA VARSLLLVVL DCPLARWQRF CRISLPHSRM SIQEDNGLFA  420
TIRVLQWVWA PSSSVFPTSS FHAEFVVRVE LTLLRFNDEL RGLLLLSPSS WRQPDGDYRF  480
VKRAARQRRP KVAFVAALPQ LPVDFFRSFE TDGFMLPFDL FGNVLGFIPV NSVALY

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	32	58	RRRRQDMKGLCVKLASLIPNEHCSKSK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G10586.1	3e-13	bHLH family protein

Link Out ? help Back to Top
Ensembl	OGLUM01G00620.1