PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OGLUM01G00630.1
Organism
Oryza glumipatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family bHLH
Protein Properties Length: 221aa    MW: 23802.8 Da    PI: 9.8379
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OGLUM01G00630.1genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH27.55.6e-0937105455
                      HHHHHHHHHHHHHHHHHHHHHCTSCC.C...................TTS-STCHHHHHHHHHHHHHHH CS
              HLH   4 ahnerErrRRdriNsafeeLrellPk.as................kapskKlsKaeiLekAveYIksLq 55 
                        + +E++RR +++    +L +l+P  a+                + +++ ++  + Le+A  YIk+L+
  OGLUM01G00630.1  37 ERKDVEKNRRLHMKGLCLKLSSLIPAaAPrrhhhhystsssssppSSTKEAVTQLDHLEQAAAYIKQLK 105
                      56899*********************555**************76666666****************95 PP
Sequence ? help Back to Top
Protein Sequence    Length: 221 aa     Download sequence    
MKSRKNSTTS TKAAGSCHTS SSGGGGNCYS SSSSKMERKD VEKNRRLHMK GLCLKLSSLI  60
PAAAPRRHHH HYSTSSSSSP PSSTKEAVTQ LDHLEQAAAY IKQLKGRIDE LKKRKQQAAA  120
LTTSTSNGGG GGGMPVVEVR CQDGTLDVVV VSEAIGEERE RAVRLHEVIG VLEEEGAEVV  180
NASFSVVGDK IFYTLHSQAL CSRIGLDASR VSHRLRNLLQ Y
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G10585.12e-18bHLH family protein