PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OGLUM01G02860.1
Organism
Oryza glumipatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family B3
Protein Properties Length: 323aa    MW: 34658.4 Da    PI: 10.5837
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OGLUM01G02860.1genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B393.31.7e-29134235186
                      EEEE-..-HHHHTT-EE--HHH.HTT................---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT- CS
               B3   1 ffkvltpsdvlksgrlvlpkkfaeeh................ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegD 78 
                      f+k+ tpsdv+k++rlv+pk++ae+h                   + +++ l +ed +g++W+++++y+++s++yvltkGW++Fv+++gL++gD
  OGLUM01G02860.1 134 FEKAVTPSDVGKLNRLVVPKQHAEKHfplrraassdsasaaaAAATGKGVLLNFEDGEGKVWRFRYSYWNSSQSYVLTKGWSRFVREKGLRAGD 227
                      89****************************9999888887775555699********************************************* PP

                      EEEEEE-S CS
               B3  79 fvvFkldg 86 
                       +vF+++ 
  OGLUM01G02860.1 228 AIVFSRSA 235
                      ****9664 PP
Sequence ? help Back to Top
Protein Sequence    Length: 323 aa     Download sequence    
MGVVSFSSTS SGASTATTES GGAVRMSPEP VVAVAAAAQQ LPVVKGVDSA DEVVTSKPAA  60
AAAAAVAQQS SRYKGVVPQP NGRWGAQIYE RHARIVDMLR KHTYADELRQ GLRRGRGMGA  120
RAQPTPSWAR EPLFEKAVTP SDVGKLNRLV VPKQHAEKHF PLRRAASSDS ASAAAAAATG  180
KGVLLNFEDG EGKVWRFRYS YWNSSQSYVL TKGWSRFVRE KGLRAGDAIV FSRSAYGPDK  240
LLFIDCKKNN AAVATTTTCA GDERPTTTTS GAEPRVVRLF GVDIAGGDCR KRERAVEMGQ  300
EAFLLKRQCV VHQRTPVLGA LLL
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68840.29e-63RAV family protein