PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OGLUM01G02990.1

Organism

Oryza glumipatula

Taxonomic ID

40148

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

MYB

Protein Properties

Length: 384aa MW: 42622.4 Da PI: 6.0815

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OGLUM01G02990.1	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	29.5	1.7e-09	118	163	3	47
SS-HHHHHHHHHHHHHTTTT..-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGgg..tWktIartmgkgRtlkqcksrwqky 47 +W++eE +++ +a + l + +W+++ar ++ gR++ ++ ++++++ OGLUM01G02990.1 118 KWSPEENKQFERALAGLDLRcpDWDRVARAIP-GRSALEVMNHFRDL 163 8***************99********.*********976 PP
2	Myb_DNA-binding	47.6	3.9e-15	231	275	3	47
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 +WT+eE++l++ + k++G+g+W+ I+r + ++Rt+ q+ s+ qky OGLUM01G02990.1 231 PWTEEEHKLFLLGLKKYGKGDWRNISRNFVQTRTPTQVASHAQKY 275 8*******************************************9 PP

Sequence ? help Back to Top
Protein Sequence Length: 384 aa Download sequence
MQGPITSCHS QEPDFGSLSL LLLISAQGKK AIREAKRERG EGREEILAEF EQEPREIDRL 60 LSSFRGRDRP EAELSCGKKE EEEEEEEEEK EIGDDDEGCV LPPMDHYASR GNWFMARKWS 120 PEENKQFERA LAGLDLRCPD WDRVARAIPG RSALEVMNHF RDLELDVQQI ENGMVPFPVY 180 GAAAAGGAFT LQWDGAHGVG DFRNAYRFGG GGGGKRHFGR TPEQERKKGV PWTEEEHKLF 240 LLGLKKYGKG DWRNISRNFV QTRTPTQVAS HAQKYFIRLN SGGKDKRRSS IHDITTVNLT 300 DDRPPSPSQS SLISNQSNTS TLTAAVAPFS STADVKPQNA ANASFNSPSR TLGMAGYGMG 360 LQDQGLQCGG PLHDQLAASR SILF

Sequence ? help Back to Top

Protein Sequence Length: 384 aa Download sequence

MQGPITSCHS QEPDFGSLSL LLLISAQGKK AIREAKRERG EGREEILAEF EQEPREIDRL  60
LSSFRGRDRP EAELSCGKKE EEEEEEEEEK EIGDDDEGCV LPPMDHYASR GNWFMARKWS  120
PEENKQFERA LAGLDLRCPD WDRVARAIPG RSALEVMNHF RDLELDVQQI ENGMVPFPVY  180
GAAAAGGAFT LQWDGAHGVG DFRNAYRFGG GGGGKRHFGR TPEQERKKGV PWTEEEHKLF  240
LLGLKKYGKG DWRNISRNFV QTRTPTQVAS HAQKYFIRLN SGGKDKRRSS IHDITTVNLT  300
DDRPPSPSQS SLISNQSNTS TLTAAVAPFS STADVKPQNA ANASFNSPSR TLGMAGYGMG  360
LQDQGLQCGG PLHDQLAASR SILF

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G38090.1	1e-62	MYB family protein

Link Out ? help Back to Top
Ensembl	OGLUM01G02990.1