PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OGLUM01G02990.2
Organism
Oryza glumipatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family MYB
Protein Properties Length: 316aa    MW: 34978.9 Da    PI: 6.5186
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OGLUM01G02990.2genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding29.91.3e-095095347
                     SS-HHHHHHHHHHHHHTTTT..-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding  3 rWTteEdellvdavkqlGgg..tWktIartmgkgRtlkqcksrwqky 47
                     +W++eE +++ +a + l  +  +W+++ar ++ gR++ ++ ++++++
  OGLUM01G02990.2 50 KWSPEENKQFERALAGLDLRcpDWDRVARAIP-GRSALEVMNHFRDL 95
                     8*****************99************.***********976 PP
2Myb_DNA-binding482.9e-15163207347
                      SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      +WT+eE++l++ + k++G+g+W+ I+r + ++Rt+ q+ s+ qky
  OGLUM01G02990.2 163 PWTEEEHKLFLLGLKKYGKGDWRNISRNFVQTRTPTQVASHAQKY 207
                      8*******************************************9 PP
Sequence ? help Back to Top
Protein Sequence    Length: 316 aa     Download sequence    
MRFAELSCGK KEEEEEEEEE EKEIGDDDEG CVLPPMDHYA SRGNWFMARK WSPEENKQFE  60
RALAGLDLRC PDWDRVARAI PGRSALEVMN HFRDLELDVQ QIENGMVPFP VYGAAAAGGA  120
FTLQWDGAHG VGDFRNAYRF GGGGGGKRHF GRTPEQERKK GVPWTEEEHK LFLLGLKKYG  180
KGDWRNISRN FVQTRTPTQV ASHAQKYFIR LNSGGKDKRR SSIHDITTVN LTDDRPPSPS  240
QSSLISNQSN TSTLTAAVAP FSSTADVKPQ NAANASFNSP SRTLGMAGYG MGLQDQGLQC  300
GGPLHDQLAA SRSILF
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G38090.14e-63MYB family protein