PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OGLUM01G03980.1
Organism
Oryza glumipatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family MYB_related
Protein Properties Length: 295aa    MW: 32957.1 Da    PI: 6.6783
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OGLUM01G03980.1genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like20.61e-063077154
          G2-like  1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYR 54
                     kpr rW++e HerF++a+    G +    k+i e+++ k  t  +++SH QkY 
  OGLUM01G03980.1 30 KPRERWSEEEHERFLDALIMY-GRD---WKKIEEHVGTK--TTIQIRSHAQKYF 77
                     79*****************99.777...69****99988..8899********5 PP
2Myb_DNA-binding56.18.6e-183276147
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47
                     r rW++eE+e+++da  ++G + Wk+I +++g ++t  q++s+ qky
  OGLUM01G03980.1 32 RERWSEEEHERFLDALIMYGRD-WKKIEEHVG-TKTTIQIRSHAQKY 76
                     78******************77.*********.*************9 PP
Sequence ? help Back to Top
Protein Sequence    Length: 295 aa     Download sequence    
MDRNTNNSSN SSSSSEMPGK KARKPYTITK PRERWSEEEH ERFLDALIMY GRDWKKIEEH  60
VGTKTTIQIR SHAQKYFLKV QKMGLAAGLP PQYPRRRLVM RQQQQSSPAV SSSVAATAIL  120
HGQPQCLPPH HNVAVQSSIG WDCPGNLEWA STSGTAAWGN HHGLIEPSAA FDSFPGESSF  180
MGAASFSNMS MDWSGTTSEM ATASIVQDET IELPLSPDDM QFAQVYRFIG DIFDPDSPCP  240
VETHLQKLKN MDDITVKTIL LVLRNLEDNL LSPQFEPIRR LLSTYDPNRG LSGHL
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
195102RRRLVMRQ
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G09600.11e-48MYB_related family protein