PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OGLUM01G04250.1
Organism
Oryza glumipatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family bHLH
Protein Properties Length: 255aa    MW: 28038.2 Da    PI: 9.9178
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OGLUM01G04250.1genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH33.38.5e-1169113554
                      HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
              HLH   5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                      h+e+ErrRR+riN  + +Lr+++P       k ++Ka+ L ++v+ +k+L
  OGLUM01G04250.1  69 HSEAERRRRERINAHLTTLRRMIPDT-----KQMDKATLLARVVDQVKDL 113
                      9************************9.....67***********999988 PP
Sequence ? help Back to Top
Protein Sequence    Length: 255 aa     Download sequence    
MAECQPLQLQ EGKKLQELQP YDGCNPSVYR GPILLPRQAN SAPPAVPPEM SSSSGSGRSA  60
TEARALKIHS EAERRRRERI NAHLTTLRRM IPDTKQMDKA TLLARVVDQV KDLKRKASEI  120
TQRTPLPPET NEVSIECFTG DAAAAIAGNH KTLYIKASIS CDDRPDLIAG ITHAFHGLRL  180
RTVRAEMTSL GGRVQHVFIL CREEGIAGGV SLKSLKEAVR QALAKVASPE LVYGSSHFQS  240
KRQRILESHC SIMSI
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
17378ERRRRE
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G40200.12e-29bHLH family protein