PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OGLUM01G04860.1
Organism
Oryza glumipatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family MYB_related
Protein Properties Length: 206aa    MW: 21650 Da    PI: 4.2623
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OGLUM01G04860.1genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding41.82.4e-131353446
                     S-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding  4 WTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46
                      +  E e ++ + k+lG++ W+ Ia++m+ gRt++++k++w++
  OGLUM01G04860.1 13 ISDREAETIISLQKLLGNR-WSVIAAKMP-GRTDNEIKNYWNS 53
                     577899*************.*********.***********95 PP
Sequence ? help Back to Top
Protein Sequence    Length: 206 aa     Download sequence    
MNYLRPDLKK EPISDREAET IISLQKLLGN RWSVIAAKMP GRTDNEIKNY WNSRIRKRQS  60
AAAGSGGCPT TGTVMEKEPT ANAATVAAAP EAASPPPPPI PARLPMFSCQ LLDGGGGAAA  120
TTQSPPNAGS SDISEVSACG GNGRGEDSSR DYCFSGGDVD GDGDMVHLLA LDDLDLLVDV  180
PGLLDVDAWD CELYRADYST SSSMSN
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G23250.22e-22MYB_related family protein