PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OGLUM01G04870.1

Organism

Oryza glumipatula

Taxonomic ID

40148

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

MYB_related

Protein Properties

Length: 93aa MW: 10053.2 Da PI: 7.4397

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OGLUM01G04870.1	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	24.6	5.9e-08	27	59	1	33
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgk 33 +g W++eEde+l+ ++ G tW+++a+ gk OGLUM01G04870.1 27 KGLWSPEEDERLYTHITHRGVSTWSSVAQLAGK 59 678**************************9994 PP

Sequence ? help Back to Top
Protein Sequence Length: 93 aa Download sequence
MVRKPTSSRH GEAAGGGGGA AEEKERKGLW SPEEDERLYT HITHRGVSTW SSVAQLAGKN 60 SFCLACNLID FYATNSYTCD LVSRSDKVGI AFA

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G09540.1	2e-09	MYB family protein

Link Out ? help Back to Top
Ensembl	OGLUM01G04870.1