PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OGLUM01G05880.1
Organism
Oryza glumipatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family NF-YC
Protein Properties Length: 238aa    MW: 25129.6 Da    PI: 4.2107
Description NF-YC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OGLUM01G05880.1genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YC45.41.8e-1411519917100
            NF-YC  17 knhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtr.tdifdflvdivprde 100
                      ++ +lPl r+k+i+++d d+k+++ ea  l++ a elf+  l+  +   a    rr+++   + aa  +   + dfl+d  p  e
  OGLUM01G05880.1 115 QRPALPLGRVKRIIRVDRDIKKVTNEAALLIAAATELFVGSLAAGAHRAASRRGRRAVRAVHVRAAAREhRPTADFLLDCLPAAE 199
                      4668***********************************************************98876515699*****999765 PP
Sequence ? help Back to Top
Protein Sequence    Length: 238 aa     Download sequence    
MAAAAVADEV TEAMEQVEGE REEADAVADE AAEVMEQAEG EREEATDAVA GEAGEVMKEV  60
VEGEREEANA MADEADEAME PEAEREEEAD AVADEATEPM EQVEGEGEDG DAAAQRPALP  120
LGRVKRIIRV DRDIKKVTNE AALLIAAATE LFVGSLAAGA HRAASRRGRR AVRAVHVRAA  180
AREHRPTADF LLDCLPAAEE AAPARAAAAG PSRGGGRGEA KPLPHGTRRI DAFFQKTT