PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OGLUM01G06250.1
Organism
Oryza glumipatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family MYB_related
Protein Properties Length: 366aa    MW: 39070 Da    PI: 9.5223
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OGLUM01G06250.1genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding41.14.2e-13109153347
                      SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      +WT+eE+  ++ + ++lG+g+W+ I+r +   Rt+ q+ s+ qky
  OGLUM01G06250.1 109 PWTEEEHRMFLMGLQKLGKGDWRGISRNFVVSRTPTQVASHAQKY 153
                      8*******************************************9 PP
Sequence ? help Back to Top
Protein Sequence    Length: 366 aa     Download sequence    
MTRRCSHCSN NGHNARTCPA RGGGGGGGGV RLFGVRLTSP PEVAMKKSAS MSCIASSLGS  60
GGGSGGSSPA GTGRGGGGGG EGAAGYASDD PTHASCSTNG RGERKKGTPW TEEEHRMFLM  120
GLQKLGKGDW RGISRNFVVS RTPTQVASHA QKYFIRQTNS SRRKRRSSLF DMVPEMPMDE  180
SPVVVEQLML HSTQDEATSS NQLPISHLVK QKEPEFARHL SDLQLRKHEE SEFTEPSLAA  240
LDLEMNHAAP FKTKFVLTMP TFYPALIPVP LTLWPPNVAN VGESGTNHEI LKPTPVNGKE  300
VINKADEVVG MSKLTIGDGN SNSIEPSALS LQLTGPTNTR QSAFHVNPPM AGPDLNKRNN  360
SPIHAV
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G47390.13e-76MYB_related family protein