PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OGLUM01G06460.1
Organism
Oryza glumipatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family MYB_related
Protein Properties Length: 331aa    MW: 35273.3 Da    PI: 10.2788
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OGLUM01G06460.1genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding47.54.2e-15205249347
                      SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      +WT+eE+ +++ + ++lG+g+W+ I+r++ ++Rt+ q+ s+ qky
  OGLUM01G06460.1 205 PWTEEEHRKFLVGLEKLGKGDWRGISRHFVTTRTPTQVASHAQKY 249
                      8*******************************************9 PP
Sequence ? help Back to Top
Protein Sequence    Length: 331 aa     Download sequence    
MKKTNSLFQS VDLARIKRQV QWQKCTSKAT RCCYCYISTC TILSQLLRIP SPLLLVLLAS  60
LQLLLLVVLA VLVVLGLPSA ASMARKCSSC GNNGHNSRTC TGQRSLQESG GGYGGGGAGG  120
VRLFGVQLHV GGAPLKKCFS MECLSSPSPS PAYYAAVAAA ASNSSPTVSS SSSLVSVEEA  180
GEKMANGYLS DGLMARAQER KKGVPWTEEE HRKFLVGLEK LGKGDWRGIS RHFVTTRTPT  240
QVASHAQKYF LRQSSLTQKK RRSSLFDVIE DAEKAPSHGT ARSHAAASSI LNPDAKLFIT  300
SSEQQQQRTT KNNPSFSDGG KASGATATPA T
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G56840.11e-49MYB_related family protein