PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OGLUM01G06560.3

Organism

Oryza glumipatula

Taxonomic ID

40148

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

MYB_related

Protein Properties

Length: 873aa MW: 97991.1 Da PI: 8.2166

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OGLUM01G06560.3	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	27.3	8.2e-09	46	78	3	37
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-H CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtl 37 W+++E ++++a +++G++ Wk++++ +g g+++ OGLUM01G06560.3 46 QWSKDELMRFYEAYRRHGKN-WKKVSASVG-GKSA 78 6***************99.*******.9997 PP

Sequence ? help Back to Top
Protein Sequence Length: 873 aa Download sequence
MGPAKGSRTI TKITIKGYDD RQHDEDPNSS SKVKLKKRKM SDLGPQWSKD ELMRFYEAYR 60 RHGKNWKKVS ASVGGKSADT VEALYSVHRT FLSLPEREGT AMGFVALVTG HHNVSDESKS 120 HKGSDQTVRA SGKVRKREAT GQKEKEAPHA HRSYHERRTS GLSSFKKRYY GELVKNIPRH 180 PSGKRTPRVP VIFPADMNVA HAGIPETENA INCTKKASGA TNNELECSSH GSPGISESAK 240 FVQGQTFLEA KGTGSLKKRR IVQSMEQGQT IKDEHETAMV AKEGNDLTEY QRLTNLFSPD 300 EMLVLDVLES LVTVPSKISE PKINIPSGTL GRDDSALSHR REEGPSVKRS KQGKQVGECS 360 ASKTRNKRRK KLIAEEVPTE GVTSNHLDLP EEHQVDATEC ALNSDLERGT VDLPESTANI 420 STKIPDLPSQ LKPEINMSRR SKRKSKSPCG SKYVVCNGAD NLQARRLQHC LSSESLRRWC 480 TYEWFYSAVD YPWFMDNEFV NYLNFANLSH LSRLTRSEWS TIRSSLGKPR RFSDHFLAAE 540 KDKLENYRKK VRQYYALLSE DSWDSLPPDL ARPFSIGQQD RYNVQFDRPD LGVDEVKDTD 600 CMPVNWLDNL PDDLKKRSFL SNNSHNRVEV EQIPKLTSKE NWDHISGEAE PSKTMQITSD 660 EQVEVLLSKS IFKKHYDHSL SIHGQVEIAV DIERLSNKST SGNCGPLQPL QSVDDNVRSR 720 GLSEHRNGHN DELDSYITSF VQMSLAQAKQ MVDEAMKEIS ENGKSSLEET GISNEATDCK 780 GPEPESAANS ELPRNLIFNC IATLLAIKHF SEGRHPPPNI AGVLERACLM LRPSCAENLP 840 IYNEIENFIA VIKNQILALV PSASSNARLP MYM

Sequence ? help Back to Top

Protein Sequence Length: 873 aa Download sequence

MGPAKGSRTI TKITIKGYDD RQHDEDPNSS SKVKLKKRKM SDLGPQWSKD ELMRFYEAYR  60
RHGKNWKKVS ASVGGKSADT VEALYSVHRT FLSLPEREGT AMGFVALVTG HHNVSDESKS  120
HKGSDQTVRA SGKVRKREAT GQKEKEAPHA HRSYHERRTS GLSSFKKRYY GELVKNIPRH  180
PSGKRTPRVP VIFPADMNVA HAGIPETENA INCTKKASGA TNNELECSSH GSPGISESAK  240
FVQGQTFLEA KGTGSLKKRR IVQSMEQGQT IKDEHETAMV AKEGNDLTEY QRLTNLFSPD  300
EMLVLDVLES LVTVPSKISE PKINIPSGTL GRDDSALSHR REEGPSVKRS KQGKQVGECS  360
ASKTRNKRRK KLIAEEVPTE GVTSNHLDLP EEHQVDATEC ALNSDLERGT VDLPESTANI  420
STKIPDLPSQ LKPEINMSRR SKRKSKSPCG SKYVVCNGAD NLQARRLQHC LSSESLRRWC  480
TYEWFYSAVD YPWFMDNEFV NYLNFANLSH LSRLTRSEWS TIRSSLGKPR RFSDHFLAAE  540
KDKLENYRKK VRQYYALLSE DSWDSLPPDL ARPFSIGQQD RYNVQFDRPD LGVDEVKDTD  600
CMPVNWLDNL PDDLKKRSFL SNNSHNRVEV EQIPKLTSKE NWDHISGEAE PSKTMQITSD  660
EQVEVLLSKS IFKKHYDHSL SIHGQVEIAV DIERLSNKST SGNCGPLQPL QSVDDNVRSR  720
GLSEHRNGHN DELDSYITSF VQMSLAQAKQ MVDEAMKEIS ENGKSSLEET GISNEATDCK  780
GPEPESAANS ELPRNLIFNC IATLLAIKHF SEGRHPPPNI AGVLERACLM LRPSCAENLP  840
IYNEIENFIA VIKNQILALV PSASSNARLP MYM

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	345	352	PSVKRSKQ

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G21430.2	3e-51	MYB_related family protein

Link Out ? help Back to Top
Ensembl	OGLUM01G06560.3