PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OGLUM01G06620.1

Organism

Oryza glumipatula

Taxonomic ID

40148

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

C2H2

Protein Properties

Length: 487aa MW: 51842.9 Da PI: 8.5018

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OGLUM01G06620.1	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	19.4	2.8e-06	74	96	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 y+C++Cgk F r nL+ H r H OGLUM01G06620.1 74 YVCEICGKGFQRDQNLQLHRRGH 96 9********************88 PP

Sequence ? help Back to Top
Protein Sequence Length: 487 aa Download sequence
MMLKDLAEIQ QQQLLAAAEE NMSNLTSASG DQASVSSHPA PPPAKKKRSL PGNPDPEAEV 60 IALSPRTLMA TNRYVCEICG KGFQRDQNLQ LHRRGHNLPW KLKQRNPKEV VRKKVYVCPE 120 AGCVHHDPAR ALGDLTGIKK HFSRKHGEKK WKCDKCSKRY AVHSDWKAHS KVCGTREYRC 180 DCGTLFSRRD SFITHRAFCD ALAEESARAV TAAAAVAGQQ QHGGGMLFSQ VADVLDHQAA 240 MAMGGHGLMQ ELCLKREQQQ QQQQFAPSWL TAQQQQQQLE AMAGAGNPAA MYGSARLDQE 300 FIGSSTPESG GAQQAGLSFG FSSTSSAPPH PAASSAHMSA TALLQKAAQM GATLSRPSSH 360 AHMAPAAAAS THNSSSSAAT TNAPPPPPTS NVSSTCVGAG GYGLAFEASH FIAADESSRG 420 ARSDRDTGNG VAGAGNDGLT RDFLGLRAFS HGDIMSMAGF DPCMSTTSAS SAAPYDHHHH 480 SNKPWHS

Sequence ? help Back to Top

Protein Sequence Length: 487 aa Download sequence

MMLKDLAEIQ QQQLLAAAEE NMSNLTSASG DQASVSSHPA PPPAKKKRSL PGNPDPEAEV  60
IALSPRTLMA TNRYVCEICG KGFQRDQNLQ LHRRGHNLPW KLKQRNPKEV VRKKVYVCPE  120
AGCVHHDPAR ALGDLTGIKK HFSRKHGEKK WKCDKCSKRY AVHSDWKAHS KVCGTREYRC  180
DCGTLFSRRD SFITHRAFCD ALAEESARAV TAAAAVAGQQ QHGGGMLFSQ VADVLDHQAA  240
MAMGGHGLMQ ELCLKREQQQ QQQQFAPSWL TAQQQQQQLE AMAGAGNPAA MYGSARLDQE  300
FIGSSTPESG GAQQAGLSFG FSSTSSAPPH PAASSAHMSA TALLQKAAQM GATLSRPSSH  360
AHMAPAAAAS THNSSSSAAT TNAPPPPPTS NVSSTCVGAG GYGLAFEASH FIAADESSRG  420
ARSDRDTGNG VAGAGNDGLT RDFLGLRAFS HGDIMSMAGF DPCMSTTSAS SAAPYDHHHH  480
SNKPWHS

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	101	114	KLKQRNPKEVVRKK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G55110.1	1e-105	C2H2 family protein

Link Out ? help Back to Top
Ensembl	OGLUM01G06620.1