PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OGLUM01G06710.1

Organism

Oryza glumipatula

Taxonomic ID

40148

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

bHLH

Protein Properties

Length: 327aa MW: 34672.9 Da PI: 8.6931

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OGLUM01G06710.1	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	42.9	8.5e-14	180	226	4	55
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 h + Er+RR+++N++f L+ +lP+ K +Ka+iL +A e+IksL+ OGLUM01G06710.1 180 QHTMSERKRREKLNDSFLALKAVLPTG-----SKKDKASILIRAREHIKSLE 226 599*********************6.....499*************96 PP

Sequence ? help Back to Top
Protein Sequence Length: 327 aa Download sequence
MDSSSWIHGY TNANATGANS GFMCGYAACS PVEFPQQQQL ISMQMGMDDE SAVYDGASMV 60 DDLLMPSSSA HHHAAAGSFQ YSSLTSSSAS FRSASVSCSP ESSAAATELP AATGGAFSRY 120 ARHLRPRRPP KPGACGQRMF KTAMSVLANM HVAATYRRQY YYQQAAAAAA PALPSDNQLQ 180 HTMSERKRRE KLNDSFLALK AVLPTGSKKD KASILIRARE HIKSLESKLS ELEARLVSRP 240 AAKNDKGETA APEASDETKR EDLVEIEVTT SGSGGGGGGM RTTDVVLRTL QCLREQIGDG 300 ASLVAMSTSA GSGGRPPSAN LTLQLKV

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	185	190	ERKRRE
2	186	191	RKRREK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G56960.1	2e-19	bHLH family protein

Link Out ? help Back to Top
Ensembl	OGLUM01G06710.1