PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OGLUM01G06730.1

Organism

Oryza glumipatula

Taxonomic ID

40148

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

bHLH

Protein Properties

Length: 477aa MW: 50022.1 Da PI: 7.1526

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OGLUM01G06730.1	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	36.5	8.8e-12	289	334	5	55
HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 h + Er+RR+++N++f L+ +lP+ K +K +iL +A eY+ksL+ OGLUM01G06730.1 289 HMISERKRREKLNDSFLALKAVLPPG-----SKKDKTSILIRAREYVKSLE 334 8899******************95.....4999************96 PP

Sequence ? help Back to Top
Protein Sequence Length: 477 aa Download sequence
MEDCSSWIHG YANANATAGN NGFMCGYAAS CSPVEFQQQQ QLVGSQIEHH LNQASLICNL 60 FDQETMHKIK EILGFNLVGV AFYYGMQISM QMGMDDESAV YDGASMVDDL LMASSSAHHH 120 AGAGSFQYSS PTSSSASFRS ASVSCSPESS AAATTHFLGP PAPSAAAAGF HYPEVSSQAP 180 LPLPLPPYEP QHGQYTTVLS PPPPAPELPA TTTPATGGAF RRYARHLRPR RLPKPGGCGQ 240 RMFKTAMSVL TKMHVAATYN RQYYYQQAAA AAASASAAEA PPSGNQLQHM ISERKRREKL 300 NDSFLALKAV LPPGSKKDKT SILIRAREYV KSLESKLSEL EEKNRELEAR LASRPAAAAK 360 NDKGETAAAP APEAGDETKR KDLVEIEVTT SGGGAGAADA AAAAGGDQET CTLNVDLRGG 420 GGGGGGGGGM STTDVVLRTL QCLREQIGDG ASLVAMSTSA GSGGRPPRAN LTLQLKV

Sequence ? help Back to Top

Protein Sequence Length: 477 aa Download sequence

MEDCSSWIHG YANANATAGN NGFMCGYAAS CSPVEFQQQQ QLVGSQIEHH LNQASLICNL  60
FDQETMHKIK EILGFNLVGV AFYYGMQISM QMGMDDESAV YDGASMVDDL LMASSSAHHH  120
AGAGSFQYSS PTSSSASFRS ASVSCSPESS AAATTHFLGP PAPSAAAAGF HYPEVSSQAP  180
LPLPLPPYEP QHGQYTTVLS PPPPAPELPA TTTPATGGAF RRYARHLRPR RLPKPGGCGQ  240
RMFKTAMSVL TKMHVAATYN RQYYYQQAAA AAASASAAEA PPSGNQLQHM ISERKRREKL  300
NDSFLALKAV LPPGSKKDKT SILIRAREYV KSLESKLSEL EEKNRELEAR LASRPAAAAK  360
NDKGETAAAP APEAGDETKR KDLVEIEVTT SGGGAGAADA AAAAGGDQET CTLNVDLRGG  420
GGGGGGGGGM STTDVVLRTL QCLREQIGDG ASLVAMSTSA GSGGRPPRAN LTLQLKV

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	293	298	ERKRRE
2	294	299	RKRREK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G56960.1	6e-16	bHLH family protein

Link Out ? help Back to Top
Ensembl	OGLUM01G06730.1