PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OGLUM01G06950.1

Organism

Oryza glumipatula

Taxonomic ID

40148

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

NAC

Protein Properties

Length: 749aa MW: 80191 Da PI: 3.8779

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OGLUM01G06950.1	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	80.5	3.7e-25	8	147	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknr.atksgyWkatgk..dke 91 lppG+rF+P d+elv++yL +++++++++l+ vi+e+d + + Pw L + + + +e +fF++++ k+ +gkr++r + g+W+ + d e OGLUM01G06950.1 8 LPPGVRFDPADDELVSRYLLRRLRKQPIPLHGVIHEADPLGASPWMLLADHGRGGDEAFFFAEARAKNVRGKRQKRtVEGGGFWQGQRVcvDGE 101 79**************************99***********877777889****************5555999665423444 PP NAM 92 vlsk.....kgel........vglkktLvfykgrapkgektdWvmheyrl 128 ls + + k +L f+ ++ ++g ++ Wvmhey++ OGLUM01G06950.1 102 RLSVpggdgG--GevgggleiEWRKYMLSFF-AEGERG-SSGWVMHEYAI 147 4443566651..0445666647777888899.455554.89*******86 PP

Sequence ? help Back to Top
Protein Sequence Length: 749 aa Download sequence
MAAAADGLPP GVRFDPADDE LVSRYLLRRL RKQPIPLHGV IHEADPLGAS PWMLLADHGR 60 GGDEAFFFAE ARAKNVRGKR QKRTVEGGGF WQGQRVCVDG ERLSVPGGDG GGEVGGGLEI 120 EWRKYMLSFF AEGERGSSGW VMHEYAITAP DDLASSPIRL YRVRFSGHGK KRKREPERLG 180 ARVHDDDVDG GQRAKPRRAV AETALFVQPS AVDCAESAGQ SFSGAIEPVF HDLPDMMPEQ 240 ADAGDTTETT AAVVNLTDTM SEQPVLPLAA DGDDQSSYGV IDPAFRDLAD LIVLPPEPDD 300 GGMERATPCT PMSETALFEQ QGPPLAPGNA DCADHQSSYG VIDPAFCEQA DAGEAETTVS 360 AAVVNQNYSM ALCDFNFPEV LSYVDFTAGM EPSWQQRWPP MSESAPFEQQ EPPLAPVAMV 420 DLLPGNADCA DHQSCSGVID QAFRDLPDMT VLPPEQADTG GGAETTTAMV SLTDKLKYSS 480 SMDGEAAPAW CDFDFPESTD EVLSYINFTA GAHDDNDGSV ERAAPWRPAS ETAMFEQPSA 540 VDLPPGDADC AESADQSFSG VIEPVFRDLR DMVREQADAG DTAETTAAVV NQNYSMALCD 600 FDFPESTGEA LSYIDFTAGA HTDNDGGVSE TAMFEQPGSP PQHDPLPMDA DGADQSSSSG 660 LLIDTVFRDH AEPIVLPLEQ ADAGGGAAAA VNPMDKQKYS SSMDGEAAPA WCDSDFPESI 720 DEVLSYIDFS TDDTSCIDFS MDDLFDLAD

Sequence ? help Back to Top

Protein Sequence Length: 749 aa Download sequence

MAAAADGLPP GVRFDPADDE LVSRYLLRRL RKQPIPLHGV IHEADPLGAS PWMLLADHGR  60
GGDEAFFFAE ARAKNVRGKR QKRTVEGGGF WQGQRVCVDG ERLSVPGGDG GGEVGGGLEI  120
EWRKYMLSFF AEGERGSSGW VMHEYAITAP DDLASSPIRL YRVRFSGHGK KRKREPERLG  180
ARVHDDDVDG GQRAKPRRAV AETALFVQPS AVDCAESAGQ SFSGAIEPVF HDLPDMMPEQ  240
ADAGDTTETT AAVVNLTDTM SEQPVLPLAA DGDDQSSYGV IDPAFRDLAD LIVLPPEPDD  300
GGMERATPCT PMSETALFEQ QGPPLAPGNA DCADHQSSYG VIDPAFCEQA DAGEAETTVS  360
AAVVNQNYSM ALCDFNFPEV LSYVDFTAGM EPSWQQRWPP MSESAPFEQQ EPPLAPVAMV  420
DLLPGNADCA DHQSCSGVID QAFRDLPDMT VLPPEQADTG GGAETTTAMV SLTDKLKYSS  480
SMDGEAAPAW CDFDFPESTD EVLSYINFTA GAHDDNDGSV ERAAPWRPAS ETAMFEQPSA  540
VDLPPGDADC AESADQSFSG VIEPVFRDLR DMVREQADAG DTAETTAAVV NQNYSMALCD  600
FDFPESTGEA LSYIDFTAGA HTDNDGGVSE TAMFEQPGSP PQHDPLPMDA DGADQSSSSG  660
LLIDTVFRDH AEPIVLPLEQ ADAGGGAAAA VNPMDKQKYS SSMDGEAAPA WCDSDFPESI  720
DEVLSYIDFS TDDTSCIDFS MDDLFDLAD

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G04070.2	3e-12	NAC family protein

Link Out ? help Back to Top
Ensembl	OGLUM01G06950.1