PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OGLUM01G09110.1

Organism

Oryza glumipatula

Taxonomic ID

40148

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

MYB_related

Protein Properties

Length: 340aa MW: 38882.5 Da PI: 5.8919

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OGLUM01G09110.1	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	45.3	2e-14	58	109	1	46
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT......TTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmg......kgRtlkqcksrwqk 46 +g+WT +E +l +++k++G ++Wk++ + g ++Rt++++k++w++ OGLUM01G09110.1 58 KGPWTSWENSILEKYIKKHGERNWKLVQKNTGllsfciTRRTDNEIKNYWNT 109 79************************************************97 PP

Sequence ? help Back to Top
Protein Sequence Length: 340 aa Download sequence
MRGHRSRVRG DGGLRMHRSG SDPDSDKAHW YMSNSDDESF VDKDKDCRRG TVAPLLKKGP 60 WTSWENSILE KYIKKHGERN WKLVQKNTGL LSFCITRRTD NEIKNYWNTR IKKCKNNRWL 120 LYPANVCNDA LNEDQYGSVD PSVREKLTNN QLEDTTSMYS APQFSYASIS NILDRRLASK 180 DYDSIEDQRN RIEVAAEYEI PLPVLKTTNN DIFPSASIFA NHGISNGNLS ALSTTDALQM 240 ELPLIQFDPN NQFIYSRAYA THLTNLALLN DQSEELLNHI DVLKYVVMKE ELSGGTHTSM 300 TPSNELVVPR YEGDVPPLQD DFTPYLYLNG ANLSIFEDIK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G32460.1	2e-15	MYB family protein

Link Out ? help Back to Top
Ensembl	OGLUM01G09110.1