PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OGLUM01G09290.1

Organism

Oryza glumipatula

Taxonomic ID

40148

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

MYB

Protein Properties

Length: 993aa MW: 108649 Da PI: 4.7908

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OGLUM01G09290.1	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	58.4	1.6e-18	51	97	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT+eEd +l +av+ + g++Wk+Ia++++ Rt+ qc +rwqk+l OGLUM01G09290.1 51 KGNWTPEEDAILSRAVQTYNGKNWKKIAECFP-DRTDVQCLHRWQKVL 97 79****************************.**********986 PP
2	Myb_DNA-binding	62.3	9.6e-20	103	149	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+W++eEde++v+ v++lG++ W+tIa+ ++ gR +kqc++rw+++l OGLUM01G09290.1 103 KGPWSKEEDEIIVQMVNKLGPKKWSTIAQALP-GRIGKQCRERWYNHL 149 79****************************.***********97 PP
3	Myb_DNA-binding	48.5	2e-15	155	197	1	45
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 + +WT+eE+ l++a++++G++ W+ + ++ gRt++++k++w+ OGLUM01G09290.1 155 KEAWTQEEEITLIHAHRMYGNK-WAELTKFLP-GRTDNSIKNHWN 197 579*****************.*****.*********8 PP

Sequence ? help Back to Top
Protein Sequence Length: 993 aa Download sequence
MMTSDNGKAP DKDGEPSGPP SAPQEGEISN EPKRRRPLNG RTTGPTRRST KGNWTPEEDA 60 ILSRAVQTYN GKNWKKIAEC FPDRTDVQCL HRWQKVLNPE LVKGPWSKEE DEIIVQMVNK 120 LGPKKWSTIA QALPGRIGKQ CRERWYNHLN PGINKEAWTQ EEEITLIHAH RMYGNKWAEL 180 TKFLPGRTDN SIKNHWNSSV KKKVNSYMSS GLLTQVSCLP LNEYSANCNS SPAMTQQNSE 240 DSGCFAVREV ENSSGCSQSS LAKVSCSQVH DTTVPLGCDL QVNANFDKNE AHDSQSSMGP 300 QACYTSAEAV ASALPAVHCH VSSSNLDPDQ HLQEDFAQGL NLDMTIDEMP TVPSFADNQT 360 VCSIENHERS LEPYDVAMEV PLSMLSSDSG AEQKLHFMSE ADFNSPNCLK SELWQDISLQ 420 GLLSGPDAVE ADSFSRSNHQ SDVYSSEADT HFLAPPYMPQ TSNSSSVMGL ADDQSPQMSV 480 PPSLICSNAM TDDAPFDNRP GRKEMPLSQA EVVTQSSSSS GDAEMFANPG CSNDRHVPSS 540 TMESIPECGD QQVTNAEEPE ASLEKEPSLT QSVTAPDEQD KGALFYEPPR FPSLDVPFVS 600 CDLVTSGDLQ EFSPLGIRQL MHSTMNVCTP MRLWGSPTHD ESTGVLLKSA AKSFICTPSI 660 LKKRHRDLLS PIPDKRIEKK YGTEKDRGVS DTSSTGIQTS CINATKDDAL ITTVLRIERS 720 ASSKSLEKKL VFSDENKENL GYTTEQTKDG QSAGNDEHMD EQTTGERSSA TNVATNDDLS 780 GNLQPAGILI EHSGDDPISP DYGKNTMNQK LNTNVKSLSV CKEGVCAKSK PTELIVEKSS 840 PCINVDYEYV NILADTPGIK RGLESPSAWK SPWFVDMHFQ GSYFTSPADS YDALGLMKQI 900 NVQTAAALVE AREVLASGGQ CDNISSDKEN TGNPDAKKEP GTTKLQTKIM AEGRVLDFEC 960 TTPVRSSDKN SGSNLGRYLS SPIPSSHLLK SFR

Sequence ? help Back to Top

Protein Sequence Length: 993 aa Download sequence

MMTSDNGKAP DKDGEPSGPP SAPQEGEISN EPKRRRPLNG RTTGPTRRST KGNWTPEEDA  60
ILSRAVQTYN GKNWKKIAEC FPDRTDVQCL HRWQKVLNPE LVKGPWSKEE DEIIVQMVNK  120
LGPKKWSTIA QALPGRIGKQ CRERWYNHLN PGINKEAWTQ EEEITLIHAH RMYGNKWAEL  180
TKFLPGRTDN SIKNHWNSSV KKKVNSYMSS GLLTQVSCLP LNEYSANCNS SPAMTQQNSE  240
DSGCFAVREV ENSSGCSQSS LAKVSCSQVH DTTVPLGCDL QVNANFDKNE AHDSQSSMGP  300
QACYTSAEAV ASALPAVHCH VSSSNLDPDQ HLQEDFAQGL NLDMTIDEMP TVPSFADNQT  360
VCSIENHERS LEPYDVAMEV PLSMLSSDSG AEQKLHFMSE ADFNSPNCLK SELWQDISLQ  420
GLLSGPDAVE ADSFSRSNHQ SDVYSSEADT HFLAPPYMPQ TSNSSSVMGL ADDQSPQMSV  480
PPSLICSNAM TDDAPFDNRP GRKEMPLSQA EVVTQSSSSS GDAEMFANPG CSNDRHVPSS  540
TMESIPECGD QQVTNAEEPE ASLEKEPSLT QSVTAPDEQD KGALFYEPPR FPSLDVPFVS  600
CDLVTSGDLQ EFSPLGIRQL MHSTMNVCTP MRLWGSPTHD ESTGVLLKSA AKSFICTPSI  660
LKKRHRDLLS PIPDKRIEKK YGTEKDRGVS DTSSTGIQTS CINATKDDAL ITTVLRIERS  720
ASSKSLEKKL VFSDENKENL GYTTEQTKDG QSAGNDEHMD EQTTGERSSA TNVATNDDLS  780
GNLQPAGILI EHSGDDPISP DYGKNTMNQK LNTNVKSLSV CKEGVCAKSK PTELIVEKSS  840
PCINVDYEYV NILADTPGIK RGLESPSAWK SPWFVDMHFQ GSYFTSPADS YDALGLMKQI  900
NVQTAAALVE AREVLASGGQ CDNISSDKEN TGNPDAKKEP GTTKLQTKIM AEGRVLDFEC  960
TTPVRSSDKN SGSNLGRYLS SPIPSSHLLK SFR

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G11510.1	1e-136	MYB family protein

Link Out ? help Back to Top
Ensembl	OGLUM01G09290.1