PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OGLUM01G10280.1

Organism

Oryza glumipatula

Taxonomic ID

40148

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

C2H2

Protein Properties

Length: 459aa MW: 47492.8 Da PI: 8.6901

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OGLUM01G10280.1	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	18.9	4.2e-06	25	47	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++Cgk F r nL+ H r H OGLUM01G10280.1 25 FVCEICGKGFQRDQNLQLHRRGH 47 89*******************88 PP
2	zf-C2H2	12.9	0.00033	101	123	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 +kC +C+k++ +s+ k H +t+ OGLUM01G10280.1 101 WKCDKCSKRYAVQSDWKAHSKTC 123 58*****************9998 PP

Sequence ? help Back to Top
Protein Sequence Length: 459 aa Download sequence
MSVGADPEAE VIALSPRTLM ATNRFVCEIC GKGFQRDQNL QLHRRGHNLP WKLRQRSGKE 60 PRKRVYVCPE KSCVHHNPSR ALGDLTGIKK HFCRKHGEKK WKCDKCSKRY AVQSDWKAHS 120 KTCGTREYRC DCGTLFSRRD SFITHRAFCD ALAEETARLN AASGAAAAAA AAAAATATSL 180 CGQSYLFAGS GGPGMAGMRP NMMMPPAAGG QLRAGQMLGP AAGGVGGDLC DGGVARHGGL 240 SLWGGEALPS MGHIGVLASG GAATVPPQLY ADLFAPSSGA PPPQFDAAQL SWLYGNGKLS 300 SSNASELTSA TAAAKEADSV PSVFSNQQHA KPAAPTDMSA TALLQKAAQI GAVTSTAAMP 360 LVSPFEPTKP GGATASPADE CGKFDGAALF AAASHHNANL GGAMSELTAA AGNVPYDVLS 420 AVRHHAGLKD AGGVGREETR DFLGVGVQAL CSSSIHGWI

Sequence ? help Back to Top

Protein Sequence Length: 459 aa Download sequence

MSVGADPEAE VIALSPRTLM ATNRFVCEIC GKGFQRDQNL QLHRRGHNLP WKLRQRSGKE  60
PRKRVYVCPE KSCVHHNPSR ALGDLTGIKK HFCRKHGEKK WKCDKCSKRY AVQSDWKAHS  120
KTCGTREYRC DCGTLFSRRD SFITHRAFCD ALAEETARLN AASGAAAAAA AAAAATATSL  180
CGQSYLFAGS GGPGMAGMRP NMMMPPAAGG QLRAGQMLGP AAGGVGGDLC DGGVARHGGL  240
SLWGGEALPS MGHIGVLASG GAATVPPQLY ADLFAPSSGA PPPQFDAAQL SWLYGNGKLS  300
SSNASELTSA TAAAKEADSV PSVFSNQQHA KPAAPTDMSA TALLQKAAQI GAVTSTAAMP  360
LVSPFEPTKP GGATASPADE CGKFDGAALF AAASHHNANL GGAMSELTAA AGNVPYDVLS  420
AVRHHAGLKD AGGVGREETR DFLGVGVQAL CSSSIHGWI

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G44160.1	1e-117	C2H2 family protein

Link Out ? help Back to Top
Ensembl	OGLUM01G10280.1