PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OGLUM01G10300.1

Organism

Oryza glumipatula

Taxonomic ID

40148

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

LBD

Protein Properties

Length: 249aa MW: 26077.3 Da PI: 9.8748

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OGLUM01G10300.1	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	102.2	4.9e-32	11	111	1	100
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeee.redamsslvyeAearardPvyGavgvilklqqqleqlkae 93 aCa+Ck++rrkC+++C la yfpa+++++f+++h +FG++n++kl+ka +e r++a+++l++eA++r rdP +G+++ ++ l+++ + l+ae OGLUM01G10300.1 11 ACAVCKHQRRKCEPNCELAAYFPANRMNDFRALHLVFGVANLTKLIKANATEAaRRRAAETLTWEARWRERDPSEGCYREVSCLRRDNAALRAE 104 7********************************************9977766************************************** PP DUF260 94 lallkee 100 a+l+++ OGLUM01G10300.1 105 NAALRRQ 111 9998876 PP

Sequence ? help Back to Top
Protein Sequence Length: 249 aa Download sequence
MTGGGSGGAG ACAVCKHQRR KCEPNCELAA YFPANRMNDF RALHLVFGVA NLTKLIKANA 60 TEAARRRAAE TLTWEARWRE RDPSEGCYRE VSCLRRDNAA LRAENAALRR QADQCACCAG 120 AAGVRHASSP TTLQHQLLLV SAYNGATAAR PGNVVPHNAT VVPGGFVAAA GGVRGANGNG 180 AMSSVRPPPH HVQAPATQTV TGFVAHAQDD RYRAVSVCPP AANAAAVPRS GAAVRGQGDY 240 RDKISDAAR

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G06280.1	2e-13	LBD family protein

Link Out ? help Back to Top
Ensembl	OGLUM01G10300.1