PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OGLUM01G10550.1

Organism

Oryza glumipatula

Taxonomic ID

40148

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

TCP

Protein Properties

Length: 219aa MW: 23615.7 Da PI: 10.7326

Description

TCP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OGLUM01G10550.1	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCP	64.6	3.7e-20	1	76	24	89
TCP 24 lsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssaseceaesssssasnsssg...........k 89 ++a+c a +F+L++ LG+++d++t++WLlqqa+ ai + tgt++++ + + +++ + +++++ + OGLUM01G10550.1 1 MPALCVAWIFQLTRDLGHKSDGETVQWLLQQAELAIVATTGTGTIPVGGA-DRQQEDALPAEQIDavagepspcgrR 76 9*****************************************77777333.11111111112222333333334441 PP

Sequence ? help Back to Top
Protein Sequence Length: 219 aa Download sequence
MPALCVAWIF QLTRDLGHKS DGETVQWLLQ QAELAIVATT GTGTIPVGGA DRQQEDALPA 60 EQIDAVAGEP SPCGRRGRRS SPLRRVPASS GGPHTSHASG PSPGRALFGE REGGGERRVV 120 EERKNRNATY ILKMAQPSGI IVFLRSSPSP RRMQPAARHT FCSLFLQFSG NCGWVANPIS 180 NSAFPRAHRH THPATAAAAT TTTTRPPWTK EMRRESCCG

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G58100.1	1e-20	TCP family protein

Link Out ? help Back to Top
Ensembl	OGLUM01G10550.1